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Allen Institute for Cell Science - Modeling

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pytorch_fnet pytorch_fnet Public archive

Three dimensional cross-modal image inference

Python 162 68
pytorch_integrated_cell pytorch_integrated_cell Public archive

Integrated Cell project implemented in pytorch

Python 44 13
aicsimageio aicsimageio Public archive

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

Python 222 51
cookiecutter-pypackage cookiecutter-pypackage Public archive

A cookiecutter template to generate a new Python package.

Python 24 7

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Showing 10 of 73 repositories

aicsimageio Public archive
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

AllenCellModeling/aicsimageio's past year of commit activity

Python 222 51 2 0 Updated Dec 1, 2025
aics_dask_utils Public archive
Utility functions commonly used by AICS projects for interacting with Dask

AllenCellModeling/aics_dask_utils's past year of commit activity

Python 1 0 2 0 Updated Dec 1, 2025
cell-tracker-gnn Public archive Forked from talbenha/cell-tracker-gnn
[ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos

AllenCellModeling/cell-tracker-gnn's past year of commit activity

Python 1 12 0 0 Updated Dec 1, 2025
crossmodal Public archive
Cross modal analysis of RNA seq and images

AllenCellModeling/crossmodal's past year of commit activity

Python 0 0 4 0 Updated Dec 1, 2025
mti_nma Public archive
Normal mode analysis worflow

AllenCellModeling/mti_nma's past year of commit activity

Python 0 0 3 1 Updated Nov 17, 2025
docker_pytorch_extended Public archive Forked from gregjohnso/docker_pytorch_extended
Uses the pytorch docker image to build an extended image with jupyter notebook, and some other python utils

AllenCellModeling/docker_pytorch_extended's past year of commit activity

Dockerfile 2 6 5 0 Updated Nov 17, 2025
cookiecutter-pypackage Public archive
A cookiecutter template to generate a new Python package.

AllenCellModeling/cookiecutter-pypackage's past year of commit activity

Python 24 MIT 7 1 0 Updated Nov 17, 2025
nvidia-docker-stats Public archive
Monitor nvidia gpu unit load associated with docker spawned processes

AllenCellModeling/nvidia-docker-stats's past year of commit activity

Python 29 GPL-3.0 13 1 2 Updated Nov 17, 2025
quilt3distribute Public archive
People commonly work with tabular datasets, people want to share their data, this makes that easier through Quilt3.

AllenCellModeling/quilt3distribute's past year of commit activity

Python 5 1 6 0 Updated Nov 17, 2025
czifile Public archive
czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html

AllenCellModeling/czifile's past year of commit activity

Jupyter Notebook 14 BSD-3-Clause 7 3 1 Updated Oct 15, 2025

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